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FunCoup Search
Gene identifier(s)
Select species
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Examples:
#1
SARS-CoV-2
TOPAS
MaxLink
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Sub-networks
Comparative interactomics
Restrictions
Expansion algorithm
MaxLink
TOPAS
Each gene independently
Genes as group
prioritize common neighbors
Expansion parameters
Link confidence threshold
Direction confidence threshold
Expansion depth
Nodes per expansion step
Search
Search for conserved subnetworks in
A.thaliana (3702)
B.subtilis (224308)
B.taurus (9913)
C.elegans (6239)
C.familiaris (9615)
C.intestinalis (7719)
D.melanogaster (7227)
D.discoideum (44689)
D.rerio (7955)
E.coli (83333)
G.gallus (9031)
H.sapiens (9606)
M.jannaschii (243232)
M.musculus (10090)
M.tuberculosis (83332)
O.sativa (39947)
P.falciparum (36329)
R.norvegicus (10116)
S.cerevisiae (559292)
S.pombe (284812)
S.scrofa (9823)
S.solfataricus (273057)
Use species-specific evidence only
Align orthologs only
Search
Gold Standard
Evidence
Genes
Gold Standards
Use all gold standards
Use only gold standard
Complex links
Metabolic links
Operon links
PPI links
Regulatory links
Signaling links
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Evidences
Use all evidences
Use only evidence from data types
DOM
GIN
GRG
MEX
MIR
PEX
PHP
PIN
SCL
TFB
Use only evidence from species
A.thaliana (3702)
B.subtilis (224308)
B.taurus (9913)
C.elegans (6239)
C.familiaris (9615)
C.intestinalis (7719)
D.melanogaster (7227)
D.discoideum (44689)
D.rerio (7955)
E.coli (83333)
G.gallus (9031)
H.sapiens (9606)
M.jannaschii (243232)
M.musculus (10090)
M.tuberculosis (83332)
O.sativa (39947)
P.falciparum (36329)
R.norvegicus (10116)
S.cerevisiae (559292)
S.pombe (284812)
S.scrofa (9823)
S.solfataricus (273057)
Search
Genes
Use all genes
Use only genes in pathway
Use only genes in tissue
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